Andrew Hoopes
PhD Student, Computer Science & Artificial Intelligence Lab, EECS, MIT
Martinos Center for Biomedical Imaging, Massachusetts General Hospital
Publications
SynthStrip: Skull-Stripping for Any Brain Image
Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl*, Malte Hoffmann*
NeuroImage 260, 119474. 2022.
Learning the Effect of Registration Hyperparameters with HyperMorph
Andrew Hoopes, Malte Hoffmann, Douglas Greve, John Guttag, Bruce Fischl, Adrian Dalca
MELBA: Journal of Machine Learning for Biomedical Imaging. 2022.
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces
Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas Greve*, Adrian Dalca*
In proceedings of MIDL: Medical Imaging with Deep Learning. 2022.
Hypermorph: Amortized Hyperparameter Learning for Image Registration
Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John Guttag, and Adrian Dalca
In proceedings of IPMI: International Conference on Information Processing and Medical Imaging, 12729, pp. 3-17. 2021.
A Deep Learning Toolbox for Automatic Segmentation of Subcortical Limbic Structures from MRI Images
Douglas Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean Augustinack
NeuroImage 244, 118610. 2021.
A Longitudinal Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis
Stefano Cerri, Andrew Hoopes, Douglas Greve, Mark Mühlau, Koen Van Leemput
Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology, pp. 119-128. 2020.